Crema - Crema is my favorite coffee shop! I happen to live very close to it, but even if I didn't I still think it would be at the top of my list. Recommended: Spanish Latte, Caramel Sutra, Vietnamese Iced Coffee, all pastries.
Cacao Drink Chocolate - Hot Chocolate Flight. That's really all you need.
Ovation - Fantastic coffee in a beautiful setting. The coffee shop has giant windows and a gorgeous park beside it.
Pearl Bakery - I was walking around the Pearl and wandered into this amazing bakery. I had a delicious cappuccino and a rugelach (probably the best since Israel). I can't wait to go back and try more of their goodies!